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Compliance Certifications and Microsoft 365: A Complete Guide

Microsoft 365 carries ISO/IEC certifications and SOC 1, SOC 2 and SOC 3 reports, but those documents prove Microsoft's controls, not yours. An auditor working through HIPAA, SOC 2, ISO 27001, GDPR or CMMC wants evidence from your tenant: who can sign in, which devices are encrypted, where sensitive data can go and how long the logs last. This guide gives the five evidence steps, the audit retention numbers, and what each Microsoft 365 plan contributes at Microsoft's October 2026 list prices.

What Microsoft's certifications cover, and what is left to you

A Microsoft SOC 2 report says an independent auditor tested the controls Microsoft operates for its cloud services over a stated period. It says nothing about whether your tenant enforces multifactor authentication, whether your laptops are encrypted, or whether a departing employee's access was removed. Those are your controls, and every framework in this guide asks you to prove them.

Control area Microsoft proves You prove Where your evidence lives
Infrastructure Datacenters, hardware, service operations Nothing Service Trust Portal reports
Identity and access The identity platform is secure MFA for everyone, Conditional Access, admin roles, access reviews Microsoft Entra admin center
Devices Intune runs as documented Devices enrolled, encrypted, compliant, wiped on exit Microsoft Intune admin center
Data Encryption at rest and in transit Labels, data loss prevention, retention, sharing rules Microsoft Purview portal
Threats Platform-level detection Defender on, alerts handled, incidents recorded Microsoft Defender portal
Logging Audit records are generated Audit enabled, retained long enough, reviewed Purview Audit

The five steps below produce the right-hand column. None of this is legal advice; the interpretation of a regulation belongs with your counsel or assessor.

Step 1: download Microsoft's reports from the Service Trust Portal

The Service Trust Portal is where Microsoft publishes its audit evidence: ISO/IEC certificates and the SOC 1, SOC 2 and SOC 3 reports, among others. The SOC 3 report is public; the SOC 1 and SOC 2 reports sit behind a sign-in and acceptance of Microsoft's terms.

  1. Sign in with a work account and accept the terms once.
  2. Save the current SOC 2 Type 2 report and ISO/IEC 27001 certificate for Microsoft 365, and for Azure if you run workloads there, into your evidence library with the download date.
  3. Record the audit period each report covers, and download the next one when Microsoft publishes it; auditors reject reports whose period has lapsed.

This takes an hour and answers the vendor-management question for Microsoft. It answers no question about your tenant.

Step 2: map your framework to the five control areas

Every framework asks for the same Microsoft 365 evidence in different words. Map once, then reuse.

Framework What it asks for in tenant terms Readiness service, quoted in writing before work begins
HIPAA Safeguards for protected health information; a Business Associate Agreement, which Microsoft provides through the Product Terms and Data Protection Addendum rather than a separate signature HIPAA assessment, $4,950; see HIPAA on Microsoft 365
SOC 2 The Trust Services Criteria: access, change, monitoring, confidentiality SOC pre-audit assessment, $4,000; see SOC 2 mapping
ISO/IEC 27001 A managed security system with a statement of applicability ISO 27001 pre-audit assessment, $4,000
GDPR Lawful processing, data discovery, subject rights, breach records; Microsoft's DPA covers the processor side GDPR data discovery, $15,000
CMMC 2.0 / NIST 800-171 110 practices over controlled unclassified information; the tenant type matters Readiness assessment, from $12,500; see CMMC 2.0 guide
FINRA / SEC 17a-4 Non-rewriteable, non-erasable records for a set period FINRA and SEC 17a-4 service, $4,950

The decision rule: build the evidence set for the one framework your customers or regulator actually ask for, then let the others reuse it. Two frameworks built separately produce two sets of screenshots of the same Conditional Access policy.

Step 3: run Compliance Manager with the assessments you are entitled to

Microsoft Purview Compliance Manager is the tracking tool, and most tenants already own part of it.

  • Included by default: the Microsoft Data Protection Baseline assessment, drawn mainly from NIST CSF and ISO with elements of FedRAMP and GDPR. It produces your initial compliance score.
  • Included with E5: Microsoft's Compliance Manager FAQ states that organizations on Microsoft 365 E5, A5 or G5 can choose up to three premium regulatory templates at no additional charge.
  • Paid: further premium templates through the Compliance Manager Premium Assessment Add-On, $6,000 per year (Microsoft list price, October 2026 price list). The four AI templates (EU AI Act, ISO/IEC 23894:2023, ISO/IEC 42001:2023 and NIST AI RMF 1.0) count as premium.
  • The score: points attach to improvement actions. Microsoft actions are controls Microsoft operates and documents; your actions are settings, policies, procedures and evidence you provide. A higher score means more recommended actions are complete. It is not a certification, and no auditor accepts it as one.

The method that produces evidence rather than a number: create one assessment for the framework from step 2; assign an owner to every improvement action within 30 days; for each action set the implementation status and the test status and attach the evidence (a policy export, a dated screenshot, a ticket number); export the assessment every quarter; review open actions monthly. The score trend is a management signal; the open-action list is the work.

Step 4: fix audit log retention before it becomes a finding

The most common Microsoft 365 audit finding we see is not a missing control; it is a log that no longer exists.

Audit level Retention How you get it List price, October 2026
Audit (Standard) 180 days for most activities Business Premium, Office 365 and Microsoft 365 E3 In the plan
Audit (Premium) One year for Microsoft Entra ID, Exchange, OneDrive and SharePoint records; up to one year for others through retention policies Microsoft 365 E5, or the E5 eDiscovery and Audit add-on E5 $720 per user per year; E5 eDiscovery and Audit $72
10-year retention Up to 10 years for licensed users under a matching policy 10-Year Audit Log Retention add-on, per user Quoted on request

Two details from Microsoft's documentation catch people out: records from service principals, system events and applications keep a fixed one-year period that custom policies do not change, and a 10-year policy is not retroactive, so it protects only records generated after it exists.

The decision rule: if your framework asks for 12 months of access logs, as SOC 2 and most cyber-insurance questionnaires do, 180 days is a finding. Move the in-scope users to Audit (Premium) before the audit period starts, not during it. What evidence you would have after a breach walks through the same gap from the incident side.

Step 5: the nine evidence items auditors ask for, and where each comes from

Evidence item Export from License it needs Cadence
MFA enforced for users and admins Conditional Access policy export Entra ID P1 (in Business Premium and E3) Quarterly
Privileged roles, just-in-time admin Entra roles report; PIM history Entra ID P2 Quarterly
Access review completions Entra ID Governance results Entra ID Governance or Entra Suite; some capabilities on P2 Per cycle
Device compliance and encryption Intune compliance report Intune (in Business Premium and E3) Monthly
DLP policies and matches Purview DLP export and incident report Exchange, SharePoint, OneDrive and Teams DLP in Business Premium and E3; endpoint DLP in E5 or the Purview Suite Monthly
Retention policies and labels Purview Data Lifecycle Management list Basic retention included; records management in E5 or the Purview Suite Quarterly
Audit searches for named events Purview Audit export See step 4 Quarterly and on request
Threat protection and incidents Defender incident report, Secure Score snapshot Defender for Business (in Business Premium) or the Defender plans in E3 and E5 Monthly
Restore test Dated drill record Microsoft 365 Backup or a third-party tool Twice a year

Each row is a dated export in a folder, not a screenshot taken the week before the audit. If the DLP row is empty today, the first five policies for a 50-user firm is the starting point, and DLP policy configuration is $8,000 per project.

Licensing for compliance at Microsoft's October 2026 list prices

Per user per year on an annual commitment, Microsoft list price, October 2026 price list, billed to you by Microsoft.

Plan or add-on Price What it contributes
Microsoft 365 Business Premium, up to 300 users $264 Entra ID P1, Intune, Defender for Business, Defender for Office 365 Plan 1, labels and DLP, Audit (Standard)
Microsoft 365 E3 $468 The same control areas with no user cap
E3 plus Microsoft Purview Suite $468 + $144 = $612 Adds Audit (Premium), eDiscovery (Premium), insider risk, records management, endpoint DLP
Microsoft 365 E5 $720 Everything above plus Entra ID P2 and the Defender plans; three premium Compliance Manager templates
E5 Information Protection and Governance $84 One third of the Purview set
E5 Insider Risk Management $72 Insider risk, communication compliance
E5 eDiscovery and Audit $72 Audit (Premium), eDiscovery (Premium)
Microsoft Entra ID P2 $120 Privileged Identity Management, risk-based Conditional Access
Entra ID Governance add-on for P2 $48 Access reviews with recommendations, lifecycle workflows
Compliance Manager Premium Assessment Add-On $6,000 per year Premium templates beyond those included

Three decision rules. The three Purview add-ons bought separately cost $228 against $144 for the suite, so the suite wins once you need two of them. E3 plus the Purview Suite at $612 is $108 under E5 but leaves out Entra ID P2 and the Defender plans, which most SOC 2 and HIPAA evidence sets end up needing; the E3-plus-add-ons math works the comparison. And license the users in scope, not the whole company: a 120-person firm with 15 people handling regulated data often runs Business Premium for all and the add-ons for the 15.

The evidence calendar that keeps you ready

Audit readiness is a schedule, not a project.

  • Monthly: export Intune compliance, DLP matches, Defender incidents and Secure Score; review open Compliance Manager actions; confirm audit logging is still on.
  • Quarterly: export Conditional Access and privileged roles; run and record access reviews for admins and guests; export the Compliance Manager assessment; check the Service Trust Portal for a newer SOC 2 report.
  • Twice a year: restore test with a written result; review retention policies against the records schedule.
  • Annually: refresh the framework mapping and re-check licensing against who actually handles regulated data.

Do this and the audit becomes a folder review. Skip it and the audit becomes a six-week reconstruction of what the tenant looked like nine months ago.

Frequently asked questions

Is Microsoft 365 HIPAA compliant?

Microsoft 365 can hold protected health information under Microsoft's Business Associate Agreement, which is part of the Product Terms and Data Protection Addendum rather than a separate contract. Compliance depends on how you configure identity, devices, data protection, logging and procedures.

Where do I get Microsoft's SOC 2 report?

From the Service Trust Portal: sign in with a work account, accept the terms, and download the current SOC 2 Type 2 report for Microsoft 365. The SOC 3 report is public and needs no sign-in.

Does a high Compliance Manager score mean we are compliant?

No. The score counts completed improvement actions, Microsoft's and yours, against the assessments you selected. An auditor wants the evidence attached to the actions, not the number.

How long does Microsoft 365 keep audit logs?

180 days by default with Audit (Standard). Audit (Premium), in Microsoft 365 E5 or the E5 eDiscovery and Audit add-on at $72 per user per year, keeps Entra ID, Exchange, OneDrive and SharePoint records for one year. Ten-year retention needs a separate per-user add-on and a policy created before the records you want to keep.

Do we need Microsoft 365 E5 for SOC 2 or ISO 27001?

Not for every user. Business Premium or E3 covers identity, device and basic data controls; the usual additions are Audit (Premium), Entra ID P2 and Entra ID Governance for the users in scope. Full E5 at $720 per user per year makes sense when a user needs most of that list.

Can we run access reviews without Entra ID P2?

Microsoft's access reviews documentation requires Microsoft Entra ID Governance or Microsoft Entra Suite, and notes that some capabilities operate with Entra ID P2. Business Premium and E3 include only P1, so access review evidence means an added license for the reviewed population.

Sources

Key takeaways

  • Microsoft's ISO certificates and SOC reports prove Microsoft's controls; every framework still asks you to prove identity, device, data, threat and logging controls in your own tenant.
  • Download the current SOC 2 Type 2 report and ISO 27001 certificate from the Service Trust Portal at the start of each audit cycle and record the period each covers.
  • Map one framework to the five control areas and let HIPAA, SOC 2, ISO 27001, GDPR and CMMC reuse the same dated exports.
  • Compliance Manager's Data Protection Baseline is included; Microsoft 365 E5 adds up to three premium templates at no extra charge, and the premium add-on is $6,000 per year at Microsoft's October 2026 list price.
  • Audit (Standard) keeps most records for 180 days; one-year retention needs Audit (Premium) through E5 or the $72-per-user E5 eDiscovery and Audit add-on, and 10-year policies are not retroactive.
  • License the users who handle regulated data, not the whole company: Business Premium at $264 or E3 at $468 for everyone, with the Purview Suite at $144 and Entra ID P2 at $120 for those in scope.
  • Evidence is a monthly and quarterly export schedule, not a screenshot sprint the week before the audit.

If the exports in step 5 are not already landing in a folder every month, the Compliance Evidence and Audit Readiness Retainer ($950 per month, quoted in writing before work begins) runs the calendar above for your tenant and hands your auditor a dated evidence set, with Microsoft licenses billed to you at list price: start the evidence retainer.

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